ࡱ> NPKLMe bjbjJJ >(_b(_b:E8T$! t"zz$($$$% % %sssssss$vhys%%%%%s$$sq,q,q,%^$$sq,%sq,q,d;j$K#)f6wss0 tg*zA*0zl;j;jz3lD%%q,%%%%%ssq+%%% t%%%%z%%%%%%%%%B J: Lucia Peixoto, Ph.D. 412 E. Spokane Falls Blvd/PBS 211 Spokane WA 99202 (509) 368-6764 lucia.peixoto@wsu.edu  HYPERLINK "https://medicine.wsu.edu/peixoto-lab/dr-lucia-peixoto/" https://medicine.wsu.edu/peixoto-lab/dr-lucia-peixoto/ Last updated: September 2020 ____________________________________________________________________________________________________ Education Clinical Internship. The Center for Autism Research. Childrens Hospital of Philadelphia, Philadelphia PA. Advisor: Robert Schultz, PhD. 2013-2014 Trainee. Neurodevelopmental Disabilities Training Program Childrens Hospital of Philadelphia, Philadelphia PA. Advisor: Michael B. Robinson, PhD. 2010-2013 Postdoctoral Fellowship in Neuroscience. Department of Biology. University of Pennsylvania. Philadelphia, PA. Advisor: Ted Abel, PhD. 2010-2015 PhD in Biology. University of Pennsylvania. Philadelphia, PA, USA. Advisor: David S. Roos, PhD 2003-2009 BSc in Biochemistry. Universidad de la Republica, Montevideo, Uruguay. Advisors: Hector Musto and Susana Castro-Sowinski. 1997-2002 Current Position(s) Assistant Professor, Department of Biomedical Sciences Elson S. Floyd College of Medicine Washington State University Spokane, WA Core Member. Sleep and Performance Research Center. Washington State University. Spokane, WA. Member. Center for Reproductive Biology. Washington State University. Pullman, WA. Member. Neuroscience Graduate group. Washington State University. Pullman, WA. Member. School of Molecular Biosciences (SMB) Graduate Group. Washington State University. Pullman, WA. Member. Pharmaceutical Sciences Graduate group. Washington State University. Spokane, WA. Academic Appointments Assistant Professor. Department of Biomedical Sciences Elson S. Floyd College of Medicine Washington State University Spokane, WA 2015 - Present Other Positions and Experience Undergraduate Intern. Laboratory of Dr. David Roos. Department of Biology, University of Pennsylvania. Philadelphia, PA. Spring 2003 Research Technician. Departamento de Bioquimica. Instituto de Investigaciones Biolgicas Clemente Estable (IIBCE). Montevideo, Uruguay. 2002-2003 Undergraduate Research Assistant. Laboratorio de Organizacin y Evolucin del Genoma. Facultad de Ciencias, Universidad de la Repblica. Montevideo, Uruguay. 2002-2003 Undergraduate Research Assistant. Departamento de Bioquimica. Instituto de Investigaciones Biolgicas Clemente Estable (IIBCE). Montevideo, Uruguay. 1999-2001 Professional Memberships and Activities Member, International Society for Autism Research (INSAR). 2014-present. Service to INSAR: Abstract Reviewer. International Meeting for Autism Research (IMFAR) 2017. May 10th-13th, San Francisco, California, USA. Abstract Reviewer. International Society for Autism Research (INSAR) Annual Meeting. May 1st-4th, 2019. Montreal, Canada. Abstract Reviewer. International Society for Autism Research (INSAR) Annual Meeting. May 6th -9th, 2020. Seattle, USA. Member, Society for Neuroscience (SfN). 2011-Present. Member, International Society for Computational Biology (ISCB). 2007-Present Service to ISCB: Chair, 4th Student Council Symposium, 16th International Conference Intelligent Systems for Molecular Biology (ISMB) Conference, July 18th 2008, Toronto, Canada. Chair, 5th Student Council Symposium, 17th I International Conference Intelligent Systems for Molecular Biology (ISMB) conference and 8th European Conference in Computational Biology (ECCB), June 27th 2009, Stockholm, Sweden. Student Representative to the Board of Directors of the International Society for Computational Biology (ISCB). January 2009-January 2010. Chair. Organizing Committee. 1st Conference of the International Society for Computational Biology in Latin America (ISCB-LA). March 13th-16th 2010 Montevideo. Uruguay Organizer, Career Development for Women in Science special interest session. 22nd Annual International Conference Intelligent Systems for Molecular Biology (ISMB), July 15th 2014, Boston, USA. Travel fellowship review committee member, 23nd Intelligent Systems for Molecular Biology (ISMB) conference and 14th European Conference on Computational Biology (ECCB). July 2015, Dublin Ireland. Member. Scientific Committee. Ibero-american Society for Bioinformatics (SOIBIO) International Conference 2016 on "Bioinformatics and Computational Biology for Innovative Genomics". An affiliated ISCB conference. April 22-26th Riviera Maya, Mexico. Travel fellowship committee co-chair, 24nd Intelligent Systems for Molecular Biology (ISMB) conference. July 2016, Orlando, FL USA. Chair. Junior Principal Investigator (JPI) Community of Special Interest (COSI) of the International Society for Computational Biology (ISCB). 2016-Present. Travel fellowship committee Chair, 25th Intelligent Systems for Molecular Biology (ISMB) conference and 16th European Conference on Computational Biology (ECCB). July 2017, Prague, Czech Republic. Organizer. Junior PI (JPI) Career Development Round Table: "On Leadership and Management". 25th Intelligent Systems for Molecular Biology (ISMB) conference and 16th European Conference on Computational Biology (ECCB). July 22nd 2017. Prague, Czech Republic. Organizer. Junior PI (JPI) Career Development Round Table: "Becoming a Leader in the Open Data Movement". 25th Intelligent Systems for Molecular Biology (ISMB) conference and 16th European Conference on Computational Biology (ECCB). July 24nd 2017. Prague, Czech Republic. Travel fellowship committee Chair, 26th Intelligent Systems for Molecular Biology (ISMB) Conference. July 2018, Chicago, IL USA. Organizer. Junior PI (JPI) Career Development Round Table: "On Leadership and Management: focus on mentorship". 26th Intelligent Systems for Molecular Biology (ISMB) Conference. July 7th 2018. Chicago, IL USA. Organizer. Junior PI (JPI) Career Development Round Table: "Funding opportunities for Early Career Researchers. Meet NSF and NIH Program Officers". 26th Intelligent Systems for Molecular Biology (ISMB) Conference. July 9th 2018. Chicago, IL USA. Abstract Reviewer. 4th Conference of the International Society for Computational Biology in Latin America (ISCB-LA) and the Ibero-american Society for Bioinformatics (SOIBIO) EMBnet 2018. Nov 5th-9th, 2018. Via del Mar, Chile. Chair, Travel fellowship committee of the 27th Intelligent Systems for Molecular Biology (ISMB) Conference. July 2019. Basel, Switzerland. Organizer. Discussion of the ISCB Code of conduct. 27th Intelligent Systems for Molecular Biology (ISMB) Conference. July 23rd 2019. Basel, Switzerland. Chair. Equity, Diversity and Inclusion committee of the International Society for Computational Biology (ISCB). July 2019-present. Editorial Board Appointments Associate editor. Journal of Neuroscience Research. 2018-Present Associate editor. Designated Statistical Reviewer. SLEEP. 2018-Present Ad-hoc Referee service Grant Review panels: Swiss National Science Foundation (SNSF). September 2015. National Institutes of Health. Genomics, Computational Biology and Technology (GCAT) study section. January-February 2020. Israel Science Foundation. March 2020. Journals: Biological Psychiatry. 2018 SLEEP. 2018-2020 Behavioral Brain Research. 2015-2018 PLos Computational Biology. 2015-2020 BMC genomics. 2016-2018 Nature Methods. 2019 Nature Communications. 2019 Journal of Neuroscience Research. 2019 Review Journal of Autism and Developmental Disorders. 2019 Committee Assignments and Service Member, Sequencing Technology Task Force September 2019-present Health Sciences Campus Washington State University, Spokane. Standing member. Equity Committee. Elson S. Floyd College of Medicine. Washington State University, Spokane. April 2018- Present Member. Group on Women in Medicine and Science (GWIMS) Elson S. Floyd College of Medicine. Washington State University, Spokane. April 2017- Present Member. Foundational Sciences Subcommittee. Curriculum Committee. Elson S. Floyd College of Medicine. Washington State University, Spokane. March 2016- Present Chair. Biomedical Sciences Symposium of the Elson S. Floyd College of Medicine. Spokane Convention Center. August 19th, 2019 Genomics Technology Advisory Committee to the Provost Washington State University, Pullman, WA. December 2018-May 2019 Lead. P4 medicine Project Workgroup. Curriculum Committee. Elson S. Floyd College of Medicine. Washington State University, Spokane. March 2017- November 2017 Standing member. Curriculum Committee. Elson S. Floyd College of Medicine. Washington State University, Spokane. March 2016- November 2017 Member, Association for Faculty Women (AFW). Washington State University. September 2016-Present. Faculty Advisor. High Performance Research Computing. Washington State University, Spokane. April 2016-Present. Faculty Advisor. Genomics Core. Washington State University, Spokane. April 2015-Present. Educational Activities Course and Curriculum Development Case writer. Foundation of Medical Sciences (FMS) Courses. FMS501, FMS502 and FMS503. MD degree. Elson S Floyd College of Medicine. WSU Spokane. 2016-2017. Content Expert, Genetics and Genomics. Foundation of Medical Sciences (FMS) Courses. FMS501, FMS502 and FMS503. MD degree. Elson S Floyd College of Medicine. WSU Spokane. 2016- Present. Short course/Workshop development and instruction Instructor and Organizer. Workshop on Career Development for Junior Principal Investigators at the 16th Intelligent Systems for Molecular Biology (ISMB)conference. July 10th 2016, Orlando, FL USA. Instructor and Organizer. Working with Pathogen Genomes Workshop. Post-meeting workshop of the Conference of the International Society for Computational Biology in Latin America (ISCB-LA) 2010. March 16th-19th 2010 Montevideo. Uruguay. Didactic Sessions Guest lecturer, BIOL476, Department of Biology, University of Pennsylvania. USA. 2008-2010. Lecturer. Data acquisition and laboratory tools; management, sharing and ownership. Training in Responsible Conduct of Research. WSU Spokane. February 13th, 2019. Lecturer. Data acquisition and laboratory tools; management, sharing and ownership. Training in Responsible Conduct of Research. WSU Spokane. December 18th, 2019. Case Based Learning Facilitator (FMS511). Fall 2020. Instructor. Deconstruction of Research (NEUROSCI 563). Fall 2020. Laboratory Teaching Teaching Assistant Department of Biology, University of Pennsylvania. USA. Courses: BIOL101, BIOL122, BIOL121, BIOL536. 2003-2005 Graduate Student Committees Xialou Zhu. Pharmaceutical Sciences PhD Candidate. College of Pharmacy. WSU. Thesis committee member. September 2017-present Advising and mentoring responsibilities Undergraduate Students Taylor Wintler. Gonzaga University. Spokane WA, USA. Undergraduate summer research internship mentor. Summer 2016 Senior Research Concentration supervisor. Fall 2016-Spring 2017. Currently: Medical Student at the Elson S. Floyd College of Medicine, Washington State University. NatalieLenberger. Georgetown College. Georgetown KY, USA. Georgetown College Program to Accelerate Learning in the Sciences (GCPALS), HHMl-funded undergraduate research program. Undergraduate summer research internship mentor. Summer 2017 Kaitlyn Ford. Gonzaga University. Spokane WA, USA. Undergraduate summer research internship mentor. Summer 2019. Research Mentor 2019-2020 Academic year. Post-Baccalaureate trainees John N. Koberstein. Research Assistant. Washington State University. December 2015-August 2016. Currently: PhD candidate. Neuroscience Graduate Program. OHSU. Elizabeth Medina. Research Assistant. Washington State University. July 2018-July 2019. Currently: PhD candidate. Neuroscience Graduate Program. WSU. Medical Students Taylor Wintler. Elson S. Floyd College of Medicine, Washington State University. MD degree Capstone/Scholarly Project Supervisor. 2018-present. Graduate Students Elizabeth Medina. Neuroscience Graduate Group. Washington State University. August 2019-Present. Rotation students Erika English. School of Molecular Biosciences Graduate Group. Washington State University. August-October 2019. Postdoctoral Fellows Hannah Schoch, PhD. Washington State University. Postdoctoral fellowship mentor. August 2017-present Leandro Roser, PhD. Washington State University. Postdoctoral fellowship mentor. March 2018-March 2019. Honors and Awards Selection to participate. American Academy of Medical Colleges. Early Career Women Faculty Leadership Development Seminar. February 1st-5th 2019. San Diego, CA. Research Award from the Washington Research Foundation. July 1st 2016. Award to participate. National Institute of Neurological Disorders and Stroke (NINDS) Grant Writing Workshop for Diverse Researchers. July 21-22, 2014. Bethesda, MD Federation of American Societies for Experimental Biology (FASEB) Minority Access for Research Careers (MARC) Program Travel Award to attend the 22nd Annual International Conference Intelligent Systems for Molecular Biology, July 11-15th, 2014, Boston, MA. Award to participate. Fourth annual National Institute of Child Health and Development (NICHD) Interdisciplinary Training Conference in Developmental Disabilities. 46th Gatlinburg Conferenceon Research and Theory in Intellectual and Developmental Disabilities. March 5, 2013 in San Antonio, Texas. International Society for Computational Biology (ISCB) Travel award to attend the 20th Annual International Conference Intelligent Systems for Molecular Biology (ISMB), July 15th-17th 2012. Long Beach CA, USA. International Society for Computational Biology (ISCB) Travel award to attend the 18th Annual International Conference Intelligent Systems for Molecular Biology (ISMB), July 9th-13th 2010. Boston MA, USA. Federation of American Societies for Experimental Biology (FASEB) Minority Access for Research Careers (MARC) Program Travel Award to attend the 17th Annual International Conference Intelligent Systems for Molecular Biology, June 27 - July 2, 2009, Stockholm, Sweden. Federation of American Societies for Experimental Biology (FASEB) Minority Access for Research Careers (MARC) Program Travel Award to attend the 16th Annual International Conference Intelligent Systems for Molecular Biology, July 19th- 23rd 2008, Toronto, Canada. American Society of Tropical Medicine and Hygiene (ASTMH) award for Scientific Excellence in Molecular, Cellular and Immunoparasitology. 2006. Awarded talk from the 17th Annual Woodshole Molecular Parasitology Conference. Undergraduate Research Fellowship from the Instituto de Investigaciones Biologicas Clemente Estable, Montevideo, Uruguay. 2002. Honors and Awards to trainees under direct supervision. World Federation of Sleep Research award to Dr. Hannah Schoch, to present our work at World Sleep 2019 in Vancouver, Canada. September 20-25th 2019. Excellence in Student Scholarship award from the Office of Research of the Elson S. Floyd College of Medicine to Taylor Winter, for her work presented at the International Society for Autism Research (INSAR) Annual Meeting. 2019. September 2nd, 2019. Travel award to Elizabeth Medina from the Center for Reproductive Biology at WSU to attend a conference of her choosing during the 2019-2020 academic year. August 5th, 2019. Travel award to Dr. Hannah Schoch from the Center for Reproductive Biology at WSU to attend a conference of her choosing during the 2019-2020 academic year. August 5th, 2019. Associated Students of Washington State University Health Sciences (ASWSUHS) Travel Grant to Taylor Winter, to present our work at the International Society for Autism Research (INSAR) Annual Meeting. May 1st-4th, 2019. Montreal, Canada. Grants and Contract Awards Current R01ES030113-01A1 (Gaddameedhi PI, Peixoto co-I) 12/1/2019-11/30/2024 NIH/NIEHS $2,210,422. Circadian clock disruption: A risk factor for environmental carcinogenesis. The goal of this project is to determine the effect of circadian clock disruption on skin carcinogenesis initiation and promotion. My lab is responsible for the analysis of genomic data generated in the project in years 3 and 4. R01CA233658 (Boyang PI, Peixoto co-I) 9/1/2018- 8/31/2023 NIH/NCI $1,749,940 total MAOA and AR Reciprocal Crosstalk in Prostate Cancer The goal of this study is to investigate whether co-targeting MAOA/AR is an actionable, effective strategy to treat CRPC and reverse anti-androgen drug resistance. My lab is responsible for the analysis of genomic data generated in the project. K01NS104172 (Peixoto PI, Mentor: Van Dongen) 9/30/2017 8/31/2021 NIH/NINDS $642,714 total Shank3 in Autism and sleep disturbances The goal of this study is to determine the underlying molecular basis of sleep problems in a mouse model of Autism Spectrum Disorders. The goal of this study is to determine the role of neurotrophins in behavioral and molecular components of sleep homeostasis. Completed R21 NS101413-01 (Frank PI, Peixoto co-I) 9/26/17 7/31/2020 NIH/NINDS $420,750 total Neurotrophin regulation of sleep in vivo R21 HD088829-01A1 (Frank PI, Peixoto co-I) 8/1/2017 6/30/2019 NIH/NICHD $420,750 total Exploratory models of cortical consolidation The goal of this study is to develop new animal models for sleep-dependent cortical plasticity WSU Grand Challenges Seed Grant (Walters PI, Peixoto co-I) 7/1/2016 12/31/2019 Washington State University $74,305 total Developmental origins of health and disease: Identifying potential mechanisms for intergenerational transmission or risk and resilience The main goal of this project is to study how stress during pregnancy can affect infant temperament through epigenetic mechanisms Advance at WSU (Peixoto PI) 9/5/2016 10/25/2017 Washington State University $10,086 total National Science Foundation Transitions Program The main goal of this award is to support a research intern for the 2016-2017 year. NRSA T32NS007413 (Robinson, M.B. PI, Peixoto Trainee) 10/1/2010-10/1/2013 NIH/NINDS $136,000 (to trainee) Childrens Hospital of Philadelphia, Intellectual and Developmental Disabilities Training Program Merit-based application required for training slot. Publications Peer-reviewed Research Articles Peixoto L., Zavala A., Romero H., Musto H. The strength of translational selection for codon usage varies in the three replicons of Sinorhizobium meliloti. Gene. 2003. 320:109-16. PMID: 14597394. Peixoto L., Fernandez V., Musto H. The effect of expression levels on codon usage in Plasmodium falciparum. Parasitology. 2004. 128(Pt 3):245-51. PMID: 15074874. Platero R., Peixoto L., O'Brian M.R., Fabiano E. Fur is involved in manganese-dependent regulation of mntA (sitA) expression in Sinorhizobium meliloti. Appl. Environ. Microbiol. 2004. 70(7):4349-55. PMID: 15240318. Peixoto L., Chen F., Harb O.S., Davis P.H., Beiting D., Small Brownback C., Ouloguem D. and Roos D.S. (2010) Integrative Genomic Approaches Highlight a Family of Parasite-Specific Kinases That Regulate Host Responses. Cell, Host & Microbe. (5-year Impact factor: 13.567)8 (Pt2): 208-218. PMID: 20709297. Vecsey C.G.**, Peixoto L.**, Choi J.H., Wimmer M., Hernandez P.J., Blackwell J., Jaganath D., Meda K., Hannenhalli S. and Abel T. Genomic analysis of sleep deprivation reveals mTOR-dependent translational inhibition in the hippocampus. Cover Article. Physiological Genomics. 2012 Oct 17;44(20):981-91. PMID: 22930738. ** authors contributed equally to the work Peixoto L. and Abel T. The role of Histone acetylation in memory formation and cognitive impairments. In Neuropsychopharmacology Reviews Epigenetic Mechanisms in Psychiatry. Neuropsychopharmacology. 2013 Jan;38(1):62-76. PMID: 22669172. Beiting D., Peixoto L., Akopyants N., Beverley S.M., John Wherry J.E., David A. Christian D.A., Hunter C.A., Brodsky I.E. and Roos D.S. Differential induction of TLR3-dependent innate immune signaling by closely related parasite species. PLoS One. 2014 Feb 5;9(2). PMID: 24505488. Peixoto L., Wimmer M., Poplwaski S., Choi J.K, Kenworthy C., Liu S., Keiko M., Garcia, B.A., Zhang N.R., Giese K.P. and Abel T. Memory consolidation and retrieval impact different epigenetic processes that regulate gene expression. BMC Genomics. 2015. May 26;16 Suppl 5:S5. PMID: 26040834. Peixoto L., Risso D., Poplwaski S.G., Wimmer M.E., Speed T.P., Wood M.A. and Abel T. How data analysis affects power, reproducibility and biological insight of RNA-seq studies in complex datasets. Nucleic Acids Research. 2015; 43(16):7664-74. PMID: 26202970. Chen R.J., Kelly G., Sengupta A., Heydendael W., Nicholas B., Beltrami S., Luz S., Peixoto L., Abel T. and Bhatnagar S. MicroRNAs as biomarkers of resilience or vulnerability to stress. Neuroscience. 2015; 305:36-48. PMID: 26208845. Tudor J.C, Davis E.J., Peixoto L., Wimmer M., van Tilborg E., Park. A.J., Poplwaski S.G., Havekes R., Pierre P. and Abel T. Sleep deprivation impairs memory by attenuating mTORC1-dependent protein synthesis. Science Signaling. 2016 Apr 26;9(425):ra41. PMID: 27117251. Gerstner J.R., Koberstein J.N.*, Watson A.J., Frank M.G and Peixoto. L. Removal of unwanted variation reveals novel patterns of gene expression linked to sleep homeostasis in murine cortex. BMC Genomics. 2016 Oct 25;17(Suppl 8):727. PMID: 27801296. Poplwaski S.G., Peixoto L., Giulia S Porcari G.S., Mathieu E Wimmer M.E., McNally A.G., Mizuno K., Giese K.P.,Chatterjee S., Koberstein J.N.*, Risso D., Speed T.P. and Abel T. Contextual Fear Conditioning Induces Differential Alternative Splicing. Neurobiology of Learning and Memory. 2016. S1074-7427(16)30118-6. PMID: 27451143. Park A.J., Havekes R., Fu X., Hansen R., Tudor J.C., Peixoto L., Li Z., Wu Y., Poplawski S.G., Baraban J.M and Abel T. Learning induces the translin/trax RNase complex to express activin receptors for persistent memory. eLife 2017;6:e27872. PMID: 28927503. Koberstein J.N*., Poplawski S.G., Wimmer M.E., Porcari P., Kao C., Gomes B., Risso D., Hakonarson H., Zhang N.R, Schultz R.T, Abel T. and Peixoto L. Learning-dependent chromatin remodeling highlights non-coding regulatory regions linked to Autism. Cover Article. Science Signaling. 16 Jan 2018: Vol. 11, Issue 513, eaan6500. PMID: 29339533. Featured in New connections: Signaling in learning disability. Ferrareli L. Editors choice: Neurodevelopment. Sci. Signal. 16 Jan 2018: Vol. 11, Issue 513, eaas9779. Ingiosi A., Wintler T.*, Schoch H.*, Singletary K., Righelli D., Roser L.*, Risso D., Frank M.G. and Peixoto L. Shank3 Modulates Sleep and Expression of Circadian Transcription Factors. Elife.2019 Apr 11;8. pii: e42819. PMID: 30973326. Elife digest featured article:  HYPERLINK "https://doi.org/10.7554/eLife.42819.002" https://doi.org/10.7554/eLife.42819.002 Featured in Shank3 puts Autism to sleep. Osterweil E.K. Science Translational Medicine 15 May 2019: Vol. 11,Issue 492, eaax1714. Wintler T.*, Schoch H.*, Frank M.G and Peixoto. L. Sleep, brain development, and Autism Spectrum Disorders: insights from animal models. J. Neurosci. Res. 2020 Jun;98(6):1137-1149. PMID: 32215963. Other Publications Abeel T., De Ridder J. and Peixoto L. 2009. Highlights from the 5th International Society for Computational Biology Student Council Symposium at the 17th Annual International Conference on Intelligent Systems for Molecular Biology and the 8th European Conference on Computational Biology. BMC Bioinformatics 2009, 10(Suppl 13):I. PMID: 19840405. Peixoto L., Gehlenborg N. and Chandra Janga S. 2008. Highlights from the 4th International Society for Computational Biology Student Council Symposium at the 17th Annual International Conference on Intelligent Systems for Molecular Biology and the 8th European Conference on Computational Biology. BMC Bioinformatics 2008, 9 (Suppl 10):I1. PMID: 19007430. Pre-prints Righelli D, Koberstein J.N.*, Zhang N., Angelini C., Peixoto L., Risso D. 2018. Differential Enriched Scan 2 (DEScan2): a fast pipeline for broad peak analysis. PeerJ Preprints 6:e27357v1  HYPERLINK "https://doi.org/10.7287/peerj.preprints.27357v1" https://doi.org/10.7287/peerj.preprints.27357v1 * Trainees under direct supervision Oral Presentations Invited Presentations National/International Sleepless in the Spectrum. Invited Seminar (virtual). UT Health San Antonio. Pharmacology Department Seminar Series. September 9h, 2020. Equity, Diversity and Inclusion initiatives at the International Society for Computational biology. Invited panelist (virtual). Women in Computational Biology panel discussion. 19th European Conference on Computational Biology (ECCB2020). September 7h, 2020. Staying woke, part 1: The Neurobiology of Sleep Disturbances in Autism. Invited Talk. Annual Biomedical Research Conference for Minority Students (ABRCMS). Anaheim, California November 14th, 2019. How sleep regulates gene expression in the brain: insights from omics studies. Invited Talk. The 2019 Latin American Conference in Chronobiology (LASC2019). Colonia del Sacramento, Uruguay. October 7th-11th, 2019. Confound it! Reproducible Biology from omics data analysis. Invited seminar. Van Andel Research Institute (VARI), Grand Rapids, Michigan. November 15th, 2018. Learning-dependent chromatin remodeling highlights non-coding regulatory regions linked to Autism. Keynote Address. 14th Student Council Symposium. 26th Intelligent Systems for Molecular Biology (ISMB) conference, Chicago, IL USA. July 6th, 2018. Confound it! Reproducible Biology from omics data analysis. Closing Keynote Address. 2018 Galaxy Community Conference (GCC2018) and Bioinformatics Open Source Conference 2018 (BOSC2018). Portland, Oregon, United States, June 25-30, 2018. Defining Career Paths in academia. Invited panelist. Panel Discussion. Human Genetic Variation and Disease. Gordon Research Seminar: Genomic Data in Human Disease and Medicine: Emerging Opportunities and Challenges. June 9th-10th, 2018. University of New England. Biddeford, ME, USA. How data analysis influences the power and reproducibility of functional genomic studies in complex systems. Invited seminar. Institut Pasteur Montevideo. Montevideo, Uruguay. October 19th, 2017. Using mouse epigenomics to identify regulatory regions relevant to Autism and Intellectual Disability. Invited seminar. Institut Pasteur Montevideo. Montevideo, Uruguay. December 22nd, 2016. Outline of funding opportunities for early career scientists by stage. Invited talk. Workshop on Career Development for Junior Principal Investigators at the 24th Intelligent Systems for Molecular Biology (ISMB) conference. July 10th, 2016. Orlando, FL USA. Removal of unwanted variation reveals novel patterns of gene expression linked to sleep homeostasis in murine cortex. Invited talk. Ibero-american Society for Bioinformatics (SOIBIO) International Conference 2016 on "Bioinformatics and Computational Biology for Innovative Genomics". An affiliated ISCB conference. April 22-26th 2016, Riviera Maya, Mexico. Learning produces widespread transcriptional and epigenetic changes in the mouse hippocampus. Invited seminar. April 24th, 2014. Washington State University, Spokane. Memory consolidation and retrieval impact different epigenetic processes that regulate gene expression. Invited seminar. May 9th, 2013. University of California, Berkeley. Genomic Scale Analysis of Lateral gene transfer In the Apicomplexan parasite Toxoplasma gondii. Awarded talk from the 17th Annual Woods hole Molecular Parasitology Conference. The 55th Annual Meeting of the American Society of Tropical Medicine and Hygiene (ASTMH), Atlanta, GA, USA. November 2006. Invitations cancelled/postponed due to COVID-19 Mechanisms Underlying Sleep Problems in the Autism Spectrum. Invited Talk. Sleep Regulation and Function Gordon Research Conference. Il Ciocco, Italy. March 8th-12th, 2020. Sleep and Regulation of Gene expression in the Autism Spectrum. Invited Seminar. Berlin Institute for Medical Systems Biology. Max Delbrck Center for Molecular Medicine. Berlin, Germany. March 6th, 2020 Upcoming Invited presentations Sleep, development and Autism Spectrum disorders. Invited Seminar. Fall series of the Circadian and Sleep Medicine Affinity Group at UCLA. December 14th, 2020. Local/Regional Sleepless in the Spectrum. Invited Seminar. School of Molecular Biosciences seminar series. Washington State University, Pullman. September 12th, 2019. Sleepless in the Spectrum. Invited talk. Retreat of the WSU Center for Reproductive Biology. Leavenworth, WA. September 5th-6th, 2019. Sleepless in the Spectrum. Invited talk. Biomedical Sciences Symposium of the Elson S. Floyd College of Medicine. Spokane Convention Center. Spokane, WA. August 19th, 2019. Sleep problems in the Autism Spectrum. Invited talk. Retreat of the Sleep and Performance Research Center. Coeur DAlene, WA. March 18th, 2019. Shank3 modulates sleep and circadian activity. Invited seminar. Sleep and Performance Research Center seminar series. Washington State University Spokane. October 25th, 2018. Computational approaches to understand epigenetic regulation using genome sequencing. Invited seminar. Whitworth University. March 9th 2017. Molecular correlates of sleep need. Invited seminar. Sleep and Performance Research Center seminar series. Washington State University Spokane. January 12th, 2017. How data analysis affects power and reproducibility of genome-wide gene expression studies in complex datasets. Invited talk. WSU Genomics Core and Illumina Next-Generation Sequencing Workshop. Pullman, WA. June 23, 2016. Experience-dependent chromatin remodeling highlights non- coding regulatory regions linked to Autism Spectrum Disorders. Invited talk. Annual retreat of the Integrative Physiology and Neuroscience Graduate group. Pullman. WA. May 31st. 2016. How data analysis affects power and reproducibility of genome-wide gene expression studies in complex datasets. Invited seminar. Whitworth University. April 8th, 2016. Peer-reviewed Oral Presentations National/International Meetings. Righelli D., Johnson B., Angelini C., Triche T., Peixoto L. and Risso D. Epigenomic Enrichment Analysis Using Bioconductor. The European Bioconductor Conference (EuroBioc2019). Brussels, Belgium. December 10th, 2019. Schoch H.*, Ingiosi A., Wintler T.*, Medina E*, Singletary K.*, Frank M.G., and Peixoto L. Developmental trajectory of sleep disturbances in a Shank3 mouse model. World Sleep 2019 in Vancouver, Canada. September 20-25th 2019. Roser L.*, Wintler T.*, Swineford L and Peixoto L. Defining non-coding genetic variants contributing to Autism Spectrum Severity using Elastic-Net regression. 4th Conference of the International Society for Computational Biology in Latin America (ISCB-LA) and the Ibero-american Society for Bioinformatics (SOIBIO) EMBnet 2018. Via del Mar, Chile. Nov 5th-9th, 2018. Righelli D, Koberstein J.N*, Zhang N, Angelini C, Peixoto L, Risso D.Differential Enriched Scan 2 ( HYPERLINK "https://bioconductor.org/packages/DEScan2" DEScan2): a fast pipeline for broad peak analysis. Bioconductor Community Conference (BioC) 2018. Toronto, Canada, July 25th-27th, 2018. Righelli D, Koberstein J.N.*, Zhang N, Angelini C, Peixoto L, Risso D.Differential Enriched Scan 2 ( HYPERLINK "https://bioconductor.org/packages/DEScan2" DEScan2): a fast pipeline for broad peak analysis. 15th Annual Meeting of the Italian Society of Bioinformatics (BITS). Torino, Italy. June 25th-27th, 2018. Peixoto L., Wimmer M., Poplawski S., Choi J., Kenworthy C., Liu S., Mizuno K., Garcia B., Zhang N., Giese K.P. and, Abel T. Memory consolidation and retrieval impact different epigenetic processes that regulate gene expression. 3rd Conference of the International Society for Computational Biology in Latin America (ISCB-LA). Belo Horizonte. Brazil. October 28th-30th 2014. Peixoto L, Wimmer M., Poplawski S., Kenworthy C. and, Abel T. The transcriptomic landscape of learning and memory formation. 20th Intelligent Systems for Molecular Biology (ISMB) conference. Long Beach CA, USA. October 28th-30th 2014. Peixoto L., Roos D.S. Genomic scale analysis of lateral gene transfer in Apicomplexan parasites: insights into early eukaryotic evolution, host-pathogen interaction and drug target development. 3rd Student Council Symposium at the 15th Intelligent Systems for Molecular Biology (ISMB). Runner-up, best talk award. Vienna, Austria, July 21st 2007. BMC Bioinformatics 2007 8(Suppl 8):S5.  HYPERLINK "https://doi.org/10.1186/1471-2105-8-S8-S5" https://doi.org/10.1186/1471-2105-8-S8-S5 Peixoto, L, Roos, D.S. Genomic Scale Analysis of Lateral gene transfer In the Apicomplexan parasite Toxoplasma gondii. 17th Annual Woodshole Molecular Parasitology Conference. Woods Hole, MA, USA, September 2006. Best-talk award. Local/Regional Meetings Medina E.*, Schoch H.*, Singletary K.*, Ingiosi A., Wintler T.*, Frank M.G., and Peixoto L. Sleep deprivation alters nuclear localization of SHANK3. Flash talk. Retreat of the WSU Center for Reproductive Biology. Leavenworth, WA. September 5th-6th, 2019. Schoch H.*, Ingiosi A., Wintler T.*, Singletary K.*, Medina E.*, Frank M.G.and Peixoto L.Developmental Trajectory of Sleep Disturbances in a Shank3 Mouse Model. Retreat of the Sleep and Performance Research Center. Coeur DAlene, WA. March 18th, 2019. Roser L.*, Schoch H.*, Peixoto L. Differential expression and local splicing variation events induced by sleep deprivation. Retreat of the Sleep and Performance Research Center. Coeur DAlene, WA. March 18th, 2019. Poster Presentations National/International Meetings Righelli D., Johnson B., Angelini C., Triche T., Peixoto L., Risso D. Epigenomic enrichment analysis using Bioconductor. 28th Intelligent Systems for Molecular Biology (ISMB) conference, virtual edition. July 13th-16th. 2020. Schoch H.*, Ingiosi A., Wintler T.*, Medina E*, Singletary K.*, Frank M.G., and Peixoto L. Developmental trajectory of sleep disturbances in a Shank3 mouse model. World Sleep 2019 in Vancouver, Canada. September 20-25th 2019. Wintler T.*, Ingiosi A., Schoch H.*, Singletary K., Righelli D., Roser L.*, Risso D., Frank M.G. and Peixoto L. Shank3 Modulates Sleep and Expression of Circadian Transcription Factors. International Society for Autism Research (INSAR) Annual Meeting. May 1st-4th, 2019. Montreal, Canada. Schoch H.*, Ingiosi A., Wintler T.*, Medina E*, Singletary K.*, Frank M.G., and Peixoto L. Developmental trajectory of sleep disturbances in a Shank3 mouse model. International Society for Autism Research (INSAR) Annual Meeting. May 1st-4th, 2019. Montreal, Canada. Koberstein J.N.*, Poplawski S.G., Wimmer M.E., Porcari J., Kao C., Gomes B., Risso D., Hakonarson H., Zhang N.R, Schultz R.T, Abel T. and Peixoto L. Learning-dependent chromatin remodeling highlights non-coding regulatory regions linked to Autism. 2018 Keystone Symposia Conference X6: Gene Control in Development and Disease March 23-27, 2018. Whistler, British Columbia, Canada. Koberstein J.N.*, Gomes.B., Poplawski S., Zhang N., Abel T. and Peixoto L. DEScan: Differential enrichment scan of epigenomic high-throughput sequencing data that leverages biological variation to ensure reproducibility. 25th Intelligent Systems for Molecular Biology (ISMB) conference and 16th European Conference on Computational Biology (ECCB). July 21st-25th, 2017. Prague, Czech Republic. Koberstein J.N.*, Poplawski S., Kao C., Hakonarson H., Schultz R., Zhang N., Abel T. and Peixoto L. DEScan: A novel strategy for the analysis of epigenomic data with multiple biological replicates. 24th Intelligent Systems for Molecular Biology (ISMB) conference. July 8th-12th, 2016. Orlando, Florida Koberstein J.N.*, Poplawski S., Abel T. and Peixoto L. Learning recapitulates development at the epigenetic level highlighting regulatory regions relevant for Autism and Intellectual disability. Poster Presentation. International Meeting for Autism Research (IMFAR) 2017. May 10th-13th, San Francisco, California, USA. Peixoto L., Risso D., Poplawski S., Wimmer M., Speed T.P., Wood M.A and Abel T. Power gain: how normalization affects reproducibility and biological insight of RNA-seq studies in Neuroscience. 23rd Intelligent Systems for Molecular Biology (ISMB) conference/ 14th European Conference on Computational Biology (ECCB). July 10th-14th, 2015. Dublin, Ireland. Peixoto L., Wimmer M., Poplawski S., Choi J., Kenworthy C., Liu S., Mizuno K., Garcia B., Zhang N., Giese K.P. and, Abel T. Memory consolidation and retrieval impact different epigenetic processes that regulate gene expression. 22nd Intelligent Systems for Molecular Biology (ISMB) conference, July 11th-15th 2014. Boston MA, USA. Peixoto L., Poplawski S., Kao C., Hakonarson H., Schultz R. and Abel T. Exploring Non-Coding Regulatory SNPs As Genetic Markers for Autism Spectrum Disorders. International Meeting for Autism Research (IMFAR). May 13t-16th. 2015. Salt Lake City, Utah. Peixoto L., Wimmer M, Poplawski S, Zhang N. and Abel T. Transcriptome analysis reveals differences in processes that regulate gene expression during memory consolidation and retrieval. 43rd Annual Meeting of the Society for Neuroscience (SFN). San Diego CA. November 9th-13th 2013. Peixoto L., Wimmer M., Poplawski S., Kenworthy C. and, Abel T. The transcriptomic landscape of learning and memory formation. 20th Intelligent Systems for Molecular Biology (ISMB) conference, July 15th-17th 2012. Long Beach CA, USA. Peixoto L., Wimmer M., Poplawski S., Kenworthy C. and, Abel T. The transcriptomic landscape of learning and memory formation. 41st Annual Meeting of the Society for Neuroscience (SFN). Washington DC. November 12th-16th 2011. Peixoto L., David P.H., Ouloguem D. and Roos D.S. Comparative and functional genomic characterization of the Toxoplasma gondii rhoptry kinase family (ROPK) of and its role in host-gene regulation. 17th Intelligent Systems for Molecular Biology (ISMB) Conference and 8th European Conference on Computational Biology (ECCB). Stockholm, Sweden, July 2009. Peixoto L., David P.H., Ouloguem D. and Roos D.S. Comparative and functional genomic characterization of the Toxoplasma gondii rhoptry kinase family (ROPK) of and its role in host-gene regulation. 10th International Conference on Toxoplasmosis. Kerkrade. The Netherlands. June 2009. Peixoto L., Harb O.S., David P.H., Beiting D., Chen F and Roos D.S. The ROP-K family of Toxoplasma gondii: the parasite kinome reveals an expanded family of secreted kinases with possible role in host-pathogen interaction. 16th Intelligent Systems for Molecular Biology (ISMB) conference. Toronto, Canada, July 2008. Peixoto L., Harb O.S., Davis P.H, Beiting D and Roos D.S. Evolution of secreted Kinases in Toxoplasma gondii: The ROP-K family and modulation of host cell responses. Gordon Research Conference: Biology of Host-Parasite Interactions. Newport, RI, June, 2008. Peixoto L., Roos D.S. Genomic scale analysis of lateral gene transfer in Apicomplexan parasites: insights into early eukaryotic evolution, host-pathogen interaction and drug target development. 15th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) and 6th European Conference on Computational Biology (ECCB). Vienna, Austria, July 2007. Peixoto L., Musto H. Inferring the evolutionary origin of novel metabolic pathways. World Genomics Symposium and Exposition. Atlantic City, NJ, USA. September, 2002. Castro S., Carrera I., Batista S., Cataln A.I., Peixoto L. and Martnez-Drets G. Diversity of nod, nif, dct and moc and their relation with an effective symbiosis. 12th International Congress of Nitrogen Fixation, Foz do Iguau, Paran, Brasil. September, 1999. Local/Regional Meetings Schoch H.*, Ingiosi A., Wintler T.*, Medina E*, Singletary K.*, Frank M.G., and Peixoto L. Developmental trajectory of sleep disturbances in a Shank3 mouse model. Retreat of the WSU Center for Reproductive Biology. Leavenworth, WA. September 5th-6th, 2019. Schoch H.*, Ingiosi A., Wintler T.*, Medina E*, Singletary K.*, Frank M.G., and Peixoto L. Developmental trajectory of sleep disturbances in a Shank3 mouse model. Biomedical Sciences Symposium of the Elson S. Floyd College of Medicine. Spokane Convention Center. Spokane, WA. August 19th, 2019. Wintler T.*, Ingiosi A., Schoch H.*, Singletary K., Righelli D., Roser L.*, Risso D., Frank M.G. and Peixoto L. Shank3 Modulates Sleep and Expression of Circadian Transcription Factors. Biomedical Sciences Symposium of the Elson S. Floyd College of Medicine. Spokane Convention Center. Spokane, WA. August 19th, 2019. Medina E.*, Schoch H.*, Singletary K.*, Ingiosi A., Wintler T.*, Frank M.G., and Peixoto L. Sleep deprivation alters nuclear localization of SHANK3. Biomedical Sciences Symposium of the Elson S. Floyd College of Medicine. Spokane Convention Center. Spokane, WA. August 19th, 2019. Wintler T.*, Ingiosi A., Schoch H.*, Singletary K., Righelli D., Roser L.*, Risso D., Frank M.G. and Peixoto L. Shank3 Modulates Sleep and Expression of Circadian Transcription Factors. Retreat of Sleep and Performance Research Center. Coeur DAlene, WA. March 18th, 2019. Schoch H.*, Ingiosi A., Wintler T.*, Singletary K.*, Medina E.*, Frank M.G.and Peixoto L.Developmental Trajectory of Sleep Disturbances in a Shank3 Mouse Model. Retreat of Sleep and Performance Research Center. Coeur DAlene, WA. March 18th, 2019. Roser L.*, Schoch H.*, Peixoto L. Differential expression and local splicing variation events induced by sleep deprivation. Retreat of Sleep and Performance Research Center. Coeur DAlene, WA. March 18th, 2019. Lenberger N.*, Wintler T.P.*, Singletary K and Peixoto L. Gender differences in social preference and social novelty in an autism mouse model. November 2017. Georgetown College GCPALS Research Symposium. Wintler T.P*, Singletary K. and Peixoto L. Testing for Sociability and Novelty in a Mouse Model of Autism. Murdock College Science Research Conference. November 4th, 2016. Spokane Washington, USA. Wintler T.P*, Singletary K. and Peixoto L. Testing for Sociability and Novelty in a Mouse Model of Autism. Gonzaga Fall Research Symposium. October 8, 2016. Spokane Washington, USA. * Trainees under direct supervision Other Creative Products Media Contributions Invited Editorial Viewpoints (Print) Losing sleep: How researchers miss a key contributor to autism. Lucia Peixoto and Anette Estes. July 16th, 2020. Spectrum News.  HYPERLINK "https://www.spectrumnews.org/opinion/viewpoint/losing-sleep-how-researchers-miss-a-key-contributor-to-autism/" https://www.spectrumnews.org/opinion/viewpoint/losing-sleep-how-researchers-miss-a-key-contributor-to-autism/ Interviews (Print) Sleep struggles in autistic people may have genetic basis. May 3rd, 2019. Spectrum News.  HYPERLINK "https://www.spectrumnews.org/news/sleep-struggles-autistic-people-may-genetic-basis/" https://www.spectrumnews.org/news/sleep-struggles-autistic-people-may-genetic-basis/ WSU study links gene to sleep problems in autism. April 29th, 2019. WSU Insider.  HYPERLINK "https://news.wsu.edu/2019/04/29/wsu-study-links-gene-sleep-problems-autism/" https://news.wsu.edu/2019/04/29/wsu-study-links-gene-sleep-problems-autism/ Meet a Scientist: Dr. Lucia Peixotos Work Narrows the Search for Autism Risk Factors. April 2nd, 2018. WSU Health Sciences Spokane EXTRA.  HYPERLINK "https://spokane.wsu.edu/extra/2018/04/02/meet-scientist-lucia-peixoto-autism/" https://spokane.wsu.edu/extra/2018/04/02/meet-scientist-lucia-peixoto-autism/ Autism genes abound in DNA regions involved in learning. February 22nd, 2018. Spectrum news.  HYPERLINK "https://www.spectrumnews.org/news/autism-genes-abound-dna-regions-involved-learning/" https://www.spectrumnews.org/news/autism-genes-abound-dna-regions-involved-learning/ Learning opens the genome The Scientist Magazine. January 17th, 2018.  HYPERLINK "https://www.the-scientist.com/?articles.view/articleNo/51373/title/Learning-Opens-the-Genome/" https://www.the-scientist.com/?articles.view/articleNo/51373/title/Learning-Opens-the-Genome/ Adapted to Spanish for CIVICA:  HYPERLINK "http://civica.com.es/ciencia/cambios-epigeneticos-inducidos-genoma-las-neuronas-del-cerebro-relacion-autismo/" http://civica.com.es/ciencia/cambios-epigeneticos-inducidos-genoma-las-neuronas-del-cerebro-relacion-autismo/ Adapted to Spanish for Quo:  HYPERLINK "http://www.quo.es/ciencia/un-estudio-epigenetico-senala-los-factores-de-riesgo-de-autismo" http://www.quo.es/ciencia/un-estudio-epigenetico-senala-los-factores-de-riesgo-de-autismo Adapted to Portuguese for ZAP:  HYPERLINK "https://zap.aeiou.pt/2-mil-novos-marcadores-biologicos-podem-ajudar-descobrir-desenvolve-autismo-188029" https://zap.aeiou.pt/2-mil-novos-marcadores-biologicos-podem-ajudar-descobrir-desenvolve-autismo-188029 Adapted to Greek for HealthWeb:  HYPERLINK "http://www.healthweb.gr/2018/01/epigenetiki-meleta-tous-paragontes-kindynou-tou-aftismou/" http://www.healthweb.gr/2018/01/epigenetiki-meleta-tous-paragontes-kindynou-tou-aftismou/ Epigenetics study helps focus search for autism risk factors WSU News. January 16th, 2018.  HYPERLINK "https://news.wsu.edu/2018/01/16/epigenetics-autism-risk-factors/" https://news.wsu.edu/2018/01/16/epigenetics-autism-risk-factors/ WSU Spokane nets $10 million for scientific health research The Spokesman Review. December 23rd, 2017  HYPERLINK "http://www.spokesman.com/stories/2017/dec/23/wsu-spokane-nets-10-million-for-scientific-health-/" http://www.spokesman.com/stories/2017/dec/23/wsu-spokane-nets-10-million-for-scientific-health-/ Interviews (Video/Broadcast) WSU studying autism severity in individuals. January 24th, 2018. KREM2 News at 6.  HYPERLINK "http://www.krem.com/news/health/wsu-studying-autism-severity-in-individuals/511318074" http://www.krem.com/news/health/wsu-studying-autism-severity-in-individuals/511318074 Teaching genomics medicine to WSU Medical students. September 14th, 2015. WSU Spokane YouTube Channel.  HYPERLINK "https://www.youtube.com/watch?v=7U-neYXaTPg" https://www.youtube.com/watch?v=7U-neYXaTPg Coverage Reactions from INSAR 2019. May 4th, 2019. Spectrum News.  HYPERLINK "https://www.spectrumnews.org/news/reactions-insar-2019/" https://www.spectrumnews.org/news/reactions-insar-2019/ Epigenetics reveals possible DNA regions associated with autism. January 18th, 2018. Australias Science Channel:  HYPERLINK "https://australiascience.tv/epigenetics-reveals-possible-dna-regions-associated-with-autism/" https://australiascience.tv/epigenetics-reveals-possible-dna-regions-associated-with-autism/ New connections: Signaling in learning disability. Ferrareli L. Editors choice: Neurodevelopment. Sci. Signal. 16 Jan 2018: Vol. 11, Issue 513, eaas9779. Commentaries Mutations between genes, long overlooked, may be key in autism. May 27th, 2019. Spectrum News.  HYPERLINK "https://www.spectrumnews.org/news/mutations-genes-long-overlooked-may-key-autism/" https://www.spectrumnews.org/news/mutations-genes-long-overlooked-may-key-autism/ Early life experiences may shift severity of autism. May 3rd, 2019. Spectrum news.  HYPERLINK "https://www.spectrumnews.org/news/early-life-experiences-may-shift-severity-autism/" https://www.spectrumnews.org/news/early-life-experiences-may-shift-severity-autism/ Analysis pinpoints genes linked to autism, developmental delay. February 6th, 2019. Spectrum news.  HYPERLINK "https://www.spectrumnews.org/news/analysis-pinpoints-genes-linked-autism-developmental-delay/" https://www.spectrumnews.org/news/analysis-pinpoints-genes-linked-autism-developmental-delay/ Analysis spotlights mutations in 'dark' regions of the genome. December 14th, 2018. Spectrum News.  HYPERLINK "https://www.spectrumnews.org/news/analysis-spotlights-mutations-dark-regions-genome/" https://www.spectrumnews.org/news/analysis-spotlights-mutations-dark-regions-genome/ Control of gene expression alters impact of autism mutations. September 27th, 2018. Spectrum News.  HYPERLINK "https://www.spectrumnews.org/news/control-gene-expression-alters-impact-autism-mutations/" https://www.spectrumnews.org/news/control-gene-expression-alters-impact-autism-mutations/ Hunt for autism variants between genes comes up empty. May 7th, 2018. Spectrum News.  HYPERLINK "https://www.spectrumnews.org/news/hunt-autism-variants-genes-comes-empty/" https://www.spectrumnews.org/news/hunt-autism-variants-genes-comes-empty/ Some mutations tied to autism may be passed down from fathers. April 18th, 2018. Spectrum News.  HYPERLINK "https://www.spectrumnews.org/news/mutations-tied-autism-may-passed-fathers/" https://www.spectrumnews.org/news/mutations-tied-autism-may-passed-fathers/ Whole genomes may power search for autism risk factors. August 23rd, 2017. Spectrum News.  HYPERLINK "https://spectrumnews.org/news/toolbox/whole-genomes-may-power-search-autism-risk-factors/" https://spectrumnews.org/news/toolbox/whole-genomes-may-power-search-autism-risk-factors/ Study in China solidifies list of genes tied to autism. December 1st, 2016. Spectrum News.  HYPERLINK "https://www.spectrumnews.org/news/study-china-solidifies-list-genes-tied-autism/" https://www.spectrumnews.org/news/study-china-solidifies-list-genes-tied-autism/ Spaces near genes may harbor pitfalls for autism. February 15th, 2016. Spectrum News.  HYPERLINK "https://spectrumnews.org/news/spaces-near-genes-may-harbor-pitfalls-for-autism/" https://spectrumnews.org/news/spaces-near-genes-may-harbor-pitfalls-for-autism/ Other Scholarly Products Tutorials and Software Software for differential Epigenomic Analysis: DEScan2 (R/Bioconductor package):  HYPERLINK "https://bioconductor.org/packages/release/bioc/html/DEScan2.html" https://bioconductor.org/packages/release/bioc/html/DEScan2.html (2018) DEScan:  HYPERLINK "https://github.com/jnkoberstein/DEScan" https://github.com/jnkoberstein/DEScan (2017) Tutorial for RNA-seq data analysis:  HYPERLINK "https://github.com/drisso/peixoto2015_tutorial" https://github.com/drisso/peixoto2015_tutorial (2015) Professional Community Activities K-12 Education Volunteer reading tutor. November 2018- June 2019. Mullan Road Elementary School. Spokane WA. Autism Awareness Day for Kindergarten. May14th 2018, Mullan Road Elementary School Kindergarten Monthly Science Class. November 2017- June 2018. Mullan Road Elementary School. Spokane WA. .     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